Scaffold Ga0111484_1008520

Overview

Basic Information

• Taxon OID: 3300007896
• Scaffold ID: Ga0111484_1008520
• Source Dataset Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Liverpool
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2286
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location

• Location Name: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F007750	Metagenome	345	Y
F009559	Metagenome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111484_10085202	F007750	AGGA	MAFLGDFGKFFGLGSSEEVLGDVGEFVAGKPGRFVGEAAARATDNLAGDGGVSPVSTADQALEQSAVSVSRRGDVPQELSTMTGTRGMTTQAGFGALAPLFGTASRFLGSKSGQIVTGVGTAVGLGSTQFMGSDSRMKPVLTQSRRNKSKVRQLVNFMGIEGTANFLSQSMNVNVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTLIKN*
Ga0111484_10085203	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTTATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLLTTGSQRNRVLVRFTNDTSGTRTIRCGIFIGG*
Ga0111484_10085205	F009559	N/A	MNQVLLYVGLILASVSFFLCVYACLRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRI