Scaffold Ga0105749_1025073

Overview

Basic Information

• Taxon OID: 3300007864
• Scaffold ID: Ga0105749_1025073
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1102
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.235
  • Long. (^o): -123.9123
  • Depth (m): 10.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004761	Metagenome / Metatranscriptome	424	Y
F104779	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105749_10250731	F104779	N/A	LSGAYYGEPISGIRPSAEVPGSRQAPPSGPYLGRGNFCAANEDTCTGRKAKGTDYCMGHLRSRGEA*
Ga0105749_10250732	F004761	GAGG	MPMSLTDVRLMVRNISDLDTTDLPNSIIDDAVKEAFQRVIVLERRWPKYQETYTFNTVANQRPYTISTIGDIREVISLVDTSSAGSRLTMIPYDNAEDIWLGNTDVPSRPYFYAVWDGQLHLYAKPDAVYPITVRAYRNPLYTWLTTITNPIDCDEWFHILFAYFVLARVYQRQEDPELSAMYLKSFEEGVAMARRDLMKTPSARPLIVSGGRQYPTMRRWLQTLGATLGT*