Basic Information | |
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Taxon OID | 3300007863 Open in IMG/M |
Scaffold ID | Ga0105744_1011544 Open in IMG/M |
Source Dataset Name | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2273 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Oregon, USA | |||||||
Coordinates | Lat. (o) | 46.2335 | Long. (o) | -123.9142 | Alt. (m) | Depth (m) | 15.1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031863 | Metagenome / Metatranscriptome | 181 | Y |
F053967 | Metagenome / Metatranscriptome | 140 | N |
F057337 | Metagenome / Metatranscriptome | 136 | N |
F071664 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0105744_10115441 | F071664 | N/A | SKLLTYLFTDWVKTETDLETLKLTKQMLNNREIEVTGIKPVLGFRSHTTNTEIQ* |
Ga0105744_10115442 | F031863 | N/A | MYWAKDMIPMGNDLYVVKRKFRIEHFEKVMQHFGANEVCENYHCETVLKGRDGFYYLCDKVDDAKII* |
Ga0105744_10115443 | F057337 | N/A | MSDLRNLNSMVVQTINNKKTLEGMEKKSSLYVGALVSVDHKKMAGHELRITKINRTKAVCEMVNGRGTYNVPLEIINIING* |
Ga0105744_10115445 | F053967 | N/A | MVKFDPTNELTEEQLEELGNKNFDDFLDYLDQKAEHLKQFTKPLSSYHTKRYASMSAQTDGKEFTKEEMQKAGEIGKKNEIIAAAKVADKLKEFDKKNPKYTDEGIKNIKTNRSQWFD* |
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