Scaffold Ga0105744_1000301

Overview

Basic Information

• Taxon OID: 3300007863
• Scaffold ID: Ga0105744_1000301
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13678
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2335
  • Long. (^o): -123.9142
  • Depth (m): 15.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005038	Metagenome / Metatranscriptome	414	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F016879	Metagenome	244	Y
F017558	Metagenome / Metatranscriptome	240	Y
F058519	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105744_100030111	F017558	N/A	MFFIIYKNKNNILTSYSNQIFSTEAEATDYGQRSLKRKDVWQVVRYDKENYDKYWYKT*
Ga0105744_100030113	F016879	AGG	MSVFKESFFEASFKTIEEFDSAEVASAKLNVSETANLEIIDIKLNKSLIKTNNDKEHENATKQHSKIVPEIEQSS*
Ga0105744_100030118	F006892	GGAGG	MSDTGIIIPLKERIRDLETINEAHQKKNGQLRQEIQDKDKLIKELQEKINNPLEKMREQGEI*
Ga0105744_100030119	F058519	N/A	MTNHLKIIGEAYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNLSVEECIAEKKIQDKIKSYVTVDMKDQMKFEFGIKFLKDICQNHIENIKELPKQKWQTEIEHVKWIDPINVPFRMFIDLTGDTHINDLKNKFPTVKYAPLKTKQTKENPNRIGDWTCSHPKIDQRAFTSDLMQIALYSHTTGLKPSLSYASATDRILFTEKNCEDLQPENLKRNLQELIAYEIAWEKKLKAANGSVDELLWLNIPDFSEIRKGSFWWNSIPQEYMEDYLKTYV*
Ga0105744_100030122	F008915	GAGG	LESNQVTLDLYEMQSAAHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN*
Ga0105744_100030124	F004990	AGAAG	MELDDYFDPKKPCIICKKGADLREGNKYYCVDHYALYVLGKPMSQIEKELNDPITK*
Ga0105744_100030127	F011253	AGG	LNRKLELQKIIKDIAKNKSLPYSAAITKIKKDRKGYYQQKDIKIKSKSLSTDRFQQYLKTIQEEEDDTQ*
Ga0105744_100030128	F004629	AGGA	MIPSKLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPRMKIRLNGEQLQVYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRSDYYKALEELKSLYNRKGYKFICK*
Ga0105744_100030132	F005038	GGAGG	MKAKDINIYNIFSATYKRNLFSFNGFGELSQMPKVKKPIRQISNIYQFPIKSYYNQKRRVK*