Scaffold Ga0105737_1091040

Overview

Basic Information

• Taxon OID: 3300007862
• Scaffold ID: Ga0105737_1091040
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 766
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9163
  • Depth (m): 9.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001416	Metagenome / Metatranscriptome	699	Y
F021434	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105737_10910401	F001416	AGGAG	MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGTATADTTMDFNVNNAEFSKNASVSALVTGEPF
Ga0105737_10910402	F021434	N/A	SQVRPFISQQSQGQPALPTRSNLGGQESQSSGVTEGFVGGIPNVLGQAARFLRTPGGQIGTGLVGGIGASMLGCGNDKMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDQFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRRAPMKRATTTLIKN*