NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105736_1016129

Scaffold Ga0105736_1016129


Overview

Basic Information
Taxon OID3300007861 Open in IMG/M
Scaffold IDGa0105736_1016129 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1324
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.234Long. (o)-123.9163Alt. (m)Depth (m)9.6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F003690Metagenome / Metatranscriptome473Y

Sequences

Protein IDFamilyRBSSequence
Ga0105736_10161292F003690GAGGMTINGFELHITNEYGFELDSFLGAIYLPWHTIILTALAVVAYKAYKKWGNRK*LLIAY*
Ga0105736_10161294F000447AGGAGGMGYVEIFRMDDEGAGWVDLSEATPDELFNIDLGLLNEGAL*
Ga0105736_10161295F001562AGGGGGMEKTQFEKDLEIKESFIDLLNDIYPEVKIGYSTFTPAEILECCDPIAFAIGLVEHEDYLAEMEND*

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