Scaffold Ga0105736_1016129

Overview

Basic Information

• Taxon OID: 3300007861
• Scaffold ID: Ga0105736_1016129
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1324
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9163
  • Depth (m): 9.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F003690	Metagenome / Metatranscriptome	473	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105736_10161292	F003690	GAGG	MTINGFELHITNEYGFELDSFLGAIYLPWHTIILTALAVVAYKAYKKWGNRK*LLIAY*
Ga0105736_10161294	F000447	AGGAGG	MGYVEIFRMDDEGAGWVDLSEATPDELFNIDLGLLNEGAL*
Ga0105736_10161295	F001562	AGGGGG	MEKTQFEKDLEIKESFIDLLNDIYPEVKIGYSTFTPAEILECCDPIAFAIGLVEHEDYLAEMEND*