NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114093_100839

Scaffold Ga0114093_100839


Overview

Basic Information
Taxon OID3300007853 Open in IMG/M
Scaffold IDGa0114093_100839 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 1, subject 765560005 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26358
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (29.82%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099451Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114093_10083936F099451AGGLCPGEYASGLLIKKIMAIDKIKTVGQLRKVIENLSDDYEIEMRVRRKLSDDEVKELHNKYGRIYPYPYETQYVELEFDDVGVSDKVLCLGVELKDK*

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