Scaffold Ga0105961_100449

Overview

Basic Information

• Taxon OID: 3300007828
• Scaffold ID: Ga0105961_100449
• Source Dataset Name: Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763961826 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6998
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Attached/Keratinized Gingiva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F071329	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105961_10044911	F071329	AGG	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASRLTKPIVSNSNGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEASTHIEIED*
Ga0105961_10044912	F018385	GGA	MMAEHVNRWDPYAEVPIETHRDPVKDDQLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNDLVFMPDSGRKIITQLFEKEVK*
Ga0105961_1004496	F027205	AGGA	VASRLIVSADDILRAVKESEEFERKALVEAQKRDRAAGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*