Scaffold Ga0104325_108540

Overview

Basic Information

• Taxon OID: 3300007822
• Scaffold ID: Ga0104325_108540
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-8-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1153
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: svalbard,norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014078	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104325_1085402	F014078	GAG	VKESVREPSSLLHDHAAQQHANVFMRAFSYPASQLPISFEKEIELADRVLIMDGILFIFQLYEREQKMTSKSGDLEKWVSGHVVRKGVKRIQNTRALLGAYVGLSLVNHFGHRMLVSPKEPDSLVSMIIYRVPQKSRAFRAARFKKSRSGGFVHVLRDADYFEICHHFVTPAELLDYFSFRRN