Scaffold Ga0104323_131862

Overview

Basic Information

• Taxon OID: 3300007821
• Scaffold ID: Ga0104323_131862
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6115
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: svalbard,norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015992	Metagenome / Metatranscriptome	250	Y
F019257	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104323_1318622	F015992	N/A	MESASWRLSTSIPAAMTNPTPPVSEQYSPSLLPRDTFRTLIALAIIALTLGGWIYVMMIPVDRFALSAQTRLWWIEQVVSFVLAIVCIGIVLRKSSFLTPAFWLTIYSLVFDVMRWYFEFKEGQLRIPLALILYALFIWRLHLARRTVAAEQREVAV*
Ga0104323_1318626	F019257	N/A	VKLASRGQRDMDAGPQPIADRAEADQVRRQAQAVYLKALISAAILTALALIQ*