Scaffold Ga0104323_120352

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104323_120352

Scaffold Ga0104323_120352

Overview

Basic Information
Taxon OID	3300007821 Open in IMG/M
Scaffold ID	Ga0104323_120352 Open in IMG/M
Source Dataset Name	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Princeton University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1558
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location
Location Name	svalbard,norway
Coordinates	Lat. (^o)	78.11096	Long. (^o)	15.55294	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047260	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104323_1203523	F047260	GAG	LKFPEDWKWDELKHRLVLTPEEKRVVTFVLAAFILGLGTKCYRDRHSHPPAPTDKKLSHVRTAQP*

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