NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104323_101588

Scaffold Ga0104323_101588


Overview

Basic Information
Taxon OID3300007821 Open in IMG/M
Scaffold IDGa0104323_101588 Open in IMG/M
Source Dataset NamePermafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPrinceton University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1023
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location
Location Namesvalbard,norway
CoordinatesLat. (o)78.11096Long. (o)15.55294Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049308Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0104323_1015881F049308N/AMAPDDKECKQCGWDLSKNAPPTTDPGDNKARLGVVAGLVVAYGVMSFLIQGSPAQAREEPVRAPQYTDAPALTTEPVSGPEMAIGTLPQAVPSTAASIASSALISIKVADTKGASIQPRDALQYKFELPETDQKCRLVGSTKGIGGFGRNIEVFLLTDDDYVFWHANPAAIAASQWETFRGSETTLDYALPGPGTYHFVVSNQMSPTPQTVAVKAQVTCAR*

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