Scaffold Ga0104324_105066

Overview

Basic Information

• Taxon OID: 3300007820
• Scaffold ID: Ga0104324_105066
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-12-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1085
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: svalbard,norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001079	Metagenome / Metatranscriptome	785	Y
F001935	Metagenome / Metatranscriptome	615	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104324_1050662	F001079	N/A	MAVIPAADWPLVFGSMQALKGHVQEYPGCQKLEAFVEPEGPDYRIHCYTVWDTPEQLEVFLERGYTFERMLADVAGIQAEAPRLMEKIF*
Ga0104324_1050663	F000280	GGAG	MAEERSPARPLVGYRDVGGDVRHSRPQMVRSWIILVVLVLLYFGWTLTVYFLEPGLR*
Ga0104324_1050664	F001935	AGGCGG	VYLKHLSSLQFLTYVSFFAVVLAALFKFVPGRSPPVREEPYPDEQLHAHDRKAAKYFLAGGFFLVLGALHMAVKNLPWLAEYLARTGYAGHLVRDLS