Scaffold Ga0104322_147087

Overview

Basic Information

• Taxon OID: 3300007819
• Scaffold ID: Ga0104322_147087
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8694
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000885	Metagenome / Metatranscriptome	849	Y
F002750	Metagenome / Metatranscriptome	533	Y
F005004	Metagenome / Metatranscriptome	415	Y
F079694	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104322_1470871	F005004	N/A	EWVADFALAGRAALEPACWASRMILFRTYYLGLAPYDTARHFIGLSERGWVNWTEQIRQRCGEELLRRGMFPPRKYFSSEMMDWRSNAAD*
Ga0104322_14708711	F002750	GGA	MKQFLQRVLRGRYVALLEEEVARLRGENRALTNSLLGTAGFPPVDFPEAVKPQGLSRLRKRSWHQIQMQREKGAAREAALDVDERKNGIVSN*
Ga0104322_1470875	F079694	AGGAG	MPSYQNLLPPISLAPGDVGFSFNNEAFPGSTQAGSQFAISSFAGQPDSGMAVRWQTIFGTAPTAVSIVLQAAMADVDAEYQTVDTTTATGGEARPVTGVQAKFLRIKFVSSTGGAGLTAKLMI*
Ga0104322_1470878	F000885	GGAGG	MATTLATGARVQFIGMVLEIAGIAALAGGVILSLHHWPAAVSLIGGGIAFYVGKKFRAQ*