Scaffold Ga0104322_147001

Overview

Basic Information

• Taxon OID: 3300007819
• Scaffold ID: Ga0104322_147001
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8204
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021579	Metagenome / Metatranscriptome	218	Y
F063026	Metagenome	130	Y
F076423	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104322_1470012	F021579	GGA	VCSNASINCRTAALPPQEIEEIQMQKGHLYEAILLVNRGIDDAVRGLERLKRAKDSGLNAAYFDEKLTLFEVHRALLNGCFCNNVEGSERRDEARFAKRHREHEKRMLDEVQVYQDVQAMEGSRRMEGKAPRVRFLSTEEQHAWERQYPKTPSDVTSETSRREGEQG*
Ga0104322_1470014	F076423	AGGAG	MAQRKALATQKSRLRSTGRRYPGVQGKVVDYISHSIDDGTLCVNVCFKDKTLFSLRFACDMSVVSADISDWKTGDYEMIREYMKPIPR*
Ga0104322_1470015	F063026	AGGAG	MKRRRPVPPTHHLKTAIRKIDKIVWKLHDEQLAAYIAYVLAVSKGEKREIRKLFAAKFTAFGDLSAELERKLAPKERRSAVRLAAYEGEMAALHDAAERLQSRMEASYMQQRRFKNGTLDDSEQRHPKAANARQRPGAT*