Scaffold Ga0104322_144363

Overview

Basic Information

• Taxon OID: 3300007819
• Scaffold ID: Ga0104322_144363
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3525
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F064567	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104322_1443632	F064567	GGCGG	VSAAPLQLVVLARKAATAQSLDAALVCAVVEQESGWNPLAMRYEPAFFAKYVAALYTNYKVTASEAYGGGFRGA*
Ga0104322_1443635	F000703	N/A	VLRIREYGEHDLESLRAIHARQGFAYALPDLSNPLFVTKLVLSETDQDSKNEKILGAALLRLTAEAYLLLDPKAGSPRDRWQALLALHAAAHRDAWHRGLEDVHAWLPPGLENKFGKRIERLGWIRDDGWTPYCLRLTDLAEK*
Ga0104322_1443636	F000781	GAG	MLTVAQLAPLKDRDPYLYETLTKVVAAVNTTSQRAGVDPSTPSPAPSPIASLAVQAANGWFDISISDPSDSRPGLFYFAESDVTPAFSSPRVYFMGASRNFYGQLGNQTLYWRAYSQYVGSLPSSPVTFGSPATAVVGGGTSGPAPLPSSGSGALPNGLLRGGNGFGLHPGARVTRTTPL