Scaffold Ga0105118_1001050

Overview

Basic Information

• Taxon OID: 3300007815
• Scaffold ID: Ga0105118_1001050
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1527
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N
F080245	Metagenome	115	N
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105118_10010502	F075084	GGA	MDFTSQNPTGKLFRRAGVAMVYARRLSASWYGYDTGVLLERSLRRILRWSINYCRVMRELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIRMIANYNSETVSKLLTEMTEECSTYEVRG*
Ga0105118_10010504	F080245	N/A	MIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKSHALLFLPTMVIKVDDELMKNLEQTSIEDLNIPLNTISNVFT*
Ga0105118_10010505	F087442	GAG	MREGLVKAGDLVIDCKPCYVAGTGFTKDDIYVVSEGTVVFKWYDKIAVVTVGEEGTKVNLLDIIDVRFLVERNENCVAIRL*