NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105118_1001050

Scaffold Ga0105118_1001050


Overview

Basic Information
Taxon OID3300007815 Open in IMG/M
Scaffold IDGa0105118_1001050 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075084Metagenome / Metatranscriptome119N
F080245Metagenome115N
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0105118_10010502F075084GGAMDFTSQNPTGKLFRRAGVAMVYARRLSASWYGYDTGVLLERSLRRILRWSINYCRVMRELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIRMIANYNSETVSKLLTEMTEECSTYEVRG*
Ga0105118_10010504F080245N/AMIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKSHALLFLPTMVIKVDDELMKNLEQTSIEDLNIPLNTISNVFT*
Ga0105118_10010505F087442GAGMREGLVKAGDLVIDCKPCYVAGTGFTKDDIYVVSEGTVVFKWYDKIAVVTVGEEGTKVNLLDIIDVRFLVERNENCVAIRL*

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