Scaffold Ga0105118_1000037

Overview

Basic Information

• Taxon OID: 3300007815
• Scaffold ID: Ga0105118_1000037
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5804
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F077499	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105118_10000373	F070317	N/A	MPNLEEIKELNLEKAIKDAQEGEVCVVEKILKGKLTDLLPLIKDPATMSQRAMEFIQRRGDDIFYLIHCTTREGRNVKLLVRQSFDPKSTFYNLMKKYKSIKVGDEINIFYNPEKRRYDFLL*
Ga0105118_10000376	F077499	AGG	MRDVFVFPYESLKVVGYPKISNAEIIFILTITVPVGDHPNADSPMDEKMRFLSTYMPLEFQKLQYMKAIDRALDILKYSLYSREDNVLFEIANKINGIYDVKELTNKVKDVECTKDLKQVDVTLTEAKRYIYPDLSLSKYASAQAKRLNMRKYEYYARIFQCYINQDKDLDMLTLFRVSNTVYNYIRLNNLSNLVKKIQFKNDRIAQLMEKIKQRVKITLEAMSDRRPVEPDVNVLNSITIRIKEIDLG*
Ga0105118_10000377	F056742	N/A	MKLADCRYKCKQSYFRKSLFVRMFIVEVEKVYGIKVKSCEEFCKFYVIFLSVAEMLYGKHYNYAISKAITRGRPNLYACVKCNSVLTAEESIVHTLQHMKQLGYNPLAYNENI*