NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105117_1001504

Scaffold Ga0105117_1001504


Overview

Basic Information
Taxon OID3300007814 Open in IMG/M
Scaffold IDGa0105117_1001504 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4352
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F080245Metagenome115N
F080247Metagenome / Metatranscriptome115Y
F085905Metagenome111N
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0105117_100150410F085905N/AMEEQLSFPSSRLSQFDYVAMNAYWLNARLKYFTDPLLYALATGIWVINLMDDVDIAETGTQKDFEYGLVYIYSNSRIDTLFIVALTHYFNVKREKEYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVTLMMWNQLYIFVMGFLYGLYGRDAEPVFQGIVARHLLPFGVLETIRRYTKK*
Ga0105117_10015043F080245N/AMIFVWTAKVIMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVIKVDDELMKNLEQTSIEDLNIPLNTIEHVFT*
Ga0105117_10015044F087442GAGGMMREGLVKAGNLVVDCKPCYIAGTGFVKDDVYVVSEGTVVFKWYDKIALITVSEEGTKITLLDIIDVRFLVERNENCLVTKL*
Ga0105117_10015047F080247N/AMIVWGKLIECLLDTDVNYLNGELFSNPLRIKGKFLVFGNLYTFERTISETGTEQVCVPIDATFMAYYEGMVAIMSFYLKEREMYANISLTDPETIKGFVNMSSFYKKYGISIPNVLDKIMYRKVPT*
Ga0105117_10015048F061983AGGAGGLKKFVIKVTVIPIKLFDEEGVLSEKEFEEVKKTMTYKGMKVLEIKDLGTDEVRKWTHFYTITAVSEGGGLFDCYYGDTIVVEKLKGVGAIVIGDKDTQPVKTMKTLVAKWYNKQLVYEEKAYEICNKFVT*
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