Scaffold Ga0105117_1001450

Overview

Basic Information

• Taxon OID: 3300007814
• Scaffold ID: Ga0105117_1001450
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4469
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008606	Metagenome / Metatranscriptome	330	Y
F039967	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105117_10014504	F039967	GGAGG	MMASIGVGVGLVAPYGAIEKVTVPEGLKLSQDIMASAVTVLLGLTVFGTSVRNMLQPPYGDTWAWLNTFTSFYMVLGAFITIRDKAD*
Ga0105117_10014508	F008606	GGAGG	VAEARDPDSRSYDKLVELSGQVNELRGQVVSLAERVARLEEENRWLRQELAEIKGAVTDIRRNSVAILASILTVFVTVVIGLIVH*