Scaffold Ga0105108_100591

Overview

Basic Information

• Taxon OID: 3300007813
• Scaffold ID: Ga0105108_100591
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1640
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101504	Metagenome / Metatranscriptome	102	N
F102725	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105108_1005911	F102725	N/A	EGKGAFGEYIRITLKDSEEKEYSTALWIKDTVSAKSKAGAFAIALGNNPEEWEGKKIKIISWSAKNRVIQAIDTSTTTKKGK*
Ga0105108_1005914	F101504	N/A	MRITTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPSVFDEIVGNTSFEANIMDKSYRYYNMRIPDNKPFQHPKIKELQHIKDKFENMKVDIDKSKVEAMANNFMTFNSVVRRYKIVNNFVKLTAILNNHKTATSEDYRFVAKMLLNNIIESELLERKGFTSTFKFNTFLFNVMLMSKYFGNVFHYSKLKTYLNVSTKTIYNYAKANNIKIDNGYIIYDNERILRVLKHVI*