Scaffold Ga0105108_100550

Overview

Basic Information

• Taxon OID: 3300007813
• Scaffold ID: Ga0105108_100550
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1699
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021807	Metagenome / Metatranscriptome	217	N
F033871	Metagenome / Metatranscriptome	176	N
F103564	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105108_1005501	F033871	N/A	PNYTVTTGWGVTIGNSSIAYIEQAILHVYGNNVSFAVNLTKGKYVLFIGASQPNAIIEVRSCFITYNVYTTGPSPLGQFLNRVFG*
Ga0105108_1005502	F103564	AGG	MSDKRMIAKKMSLKELIKLFAPLILILGIPIGSIYLPYNNAVLVFLHAWLLILVFDIMALDCIYLSKDDLRSPNAKRRLSAIRGIKLEAAIAYIFTACGIFTGGFVLASYLIVALGLTKLPAPMTSQEAIQILLLLVTLPIPAYIVRRETKKAIRLGMENATST*
Ga0105108_1005503	F021807	N/A	VRTKYKVVFGLGAVALLVFIGLTVHAVSAFARHALSIIGGLFGYVLYDVSLIVSADLVYNGITRHFKTAKSKIAFGLGAIALSVLTGLAVHSISVHMTEAAQNVNDVFTVSFALLISVILLDMVITEVRDIEYKEVMIMVSLGIALLLLNAGLLGFIAWALGKGLEVGLAFKALLASSAISTFDTLGLEAFYFSGFIYPAENMPKGRGHRQIMSEGD*