NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105109_1007512

Scaffold Ga0105109_1007512


Overview

Basic Information
Taxon OID3300007812 Open in IMG/M
Scaffold IDGa0105109_1007512 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)978
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051270Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0105109_10075122F051270N/AMKVGIYGYLRIKELGKVIKNNINYQQLMPILFQLLNNTIGNNIGANYIDVQGYGNNASVSIGTNTITFSASITVPYLNGFNAILYGYFNLGSNNYMIQLATINTTEQIPAGTYTFEWVINFTDSSGIIFNLMALSLTGNLKSVSVSFSPSPSQV

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