Scaffold Ga0105109_1001933

Overview

Basic Information

• Taxon OID: 3300007812
• Scaffold ID: Ga0105109_1001933
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2777
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013613	Metagenome / Metatranscriptome	269	Y
F023054	Metagenome / Metatranscriptome	211	Y
F077496	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105109_10019335	F023054	AGGGGG	MEETNELRAQALIDSVVLLLSRYGCITDGEAEGLLDWALEEGILTAKGLRNLILGLEDRALSCDKKDVALAAVKMLREAWKELNGSMG*
Ga0105109_10019337	F077496	GGTGG	LSAPQEEVGARLGRRKKWQDAVIMTIYIPLDLKKELEARAAARRKSLSEYAVGLILKGLEAEKETEANVDAKAEEVP*
Ga0105109_10019338	F013613	GGAGG	MPRPRKYPDGGVVISTYVPYELYEKVRELARSKGKNISEVAYELIKRGLEANGASAADPPDPPEDALHVALKGLEPLERERILQFMKRLEDAEAKLAKLGPNVRQQARTRHLTLLDMVNQQEVENLKGTVINLRHTYEKKIKRLVRDPTT