Scaffold Ga0105109_1001525

Overview

Basic Information

• Taxon OID: 3300007812
• Scaffold ID: Ga0105109_1001525
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3335
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105109_10015254	F077502	N/A	VIVMPGHGTDTAHIILWIERNLPEEGKLSELIDNIFSLITEIILSNLSQGKQPITFTSVREIADAFKEMIYRSVEQTVGTLTEDVKNQIDTYFFKKLNDIYDKYYS*
Ga0105109_10015256	F077499	AGG	MRNVFVFPYESLKAVGYPKITNAEIIFILTITIPIGDHPNADSPMEEKIRFLDMYMPLEFQKIQYLKTIDKALDILKYSLYSREDNVLLELADKINSMYNVKKLVEKIKDTECTKDLNNIKVTLTEAKRYIYPDPSLSKYASAQAKQLNIRKYEYYARIFECYVEQDKDLDMLTLYRASNLVYNYIRLNNLSSLTKKTKFKNDKIAQLAEKIKQRVDITLKAMAEKKIIETNEDLLNSITIKIKEIDLG*