Scaffold Ga0105109_1001211

Overview

Basic Information

• Taxon OID: 3300007812
• Scaffold ID: Ga0105109_1001211
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4008
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011233	Metagenome / Metatranscriptome	293	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105109_10012116	F011233	N/A	MAVPWFLPFVKGWRYHVPQLQTQLLSGIPMSFTGSYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSVVVPPAVPASPGFVAEEVVSAKLPVKVT*