Basic Information | |
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Taxon OID | 3300007790 Open in IMG/M |
Scaffold ID | Ga0105679_10294160 Open in IMG/M |
Source Dataset Name | Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Norwegian Sequencing Centre (NSC) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1358 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Desert → Soil → Zebra Blood And Desert Soils. Microbial Community Dynamics Using Metagenomics And Cultivation |
Source Dataset Sampling Location | ||||||||
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Location Name | Etosha National Park, Namibia | |||||||
Coordinates | Lat. (o) | -19.03133 | Long. (o) | 15.54865 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000972 | Metagenome | 817 | Y |
F002864 | Metagenome / Metatranscriptome | 525 | Y |
F036979 | Metagenome / Metatranscriptome | 169 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0105679_102941601 | F000972 | N/A | EEAMDNLKEAGQRIRATQSLMRSEGMTDGENYRDLLTRLSTALAMTEAAYLEARRRSDL* |
Ga0105679_102941603 | F002864 | AGGA | MSEQEPVRIPREVLEELESVSRYTRAEVLDIPTVRYVAMERGKPALVVWLDKHEQEYGQGLLNGFQAED* |
Ga0105679_102941604 | F036979 | AGGAGG | MHNDQSAQDAARLLVAFSTNHEEAKMVSDSEMERAFAPNWADAEQAGLDRVRRDNAMRWLVENNMLEREEEAE |
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