Scaffold Ga0102954_1058652

Overview

Basic Information

• Taxon OID: 3300007778
• Scaffold ID: Ga0102954_1058652
• Source Dataset Name: Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1068
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4965
  • Long. (^o): -122.1329
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053651	Metagenome	141	N
F074169	Metagenome	120	N
F087059	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102954_10586523	F074169	N/A	MKIKNLNTLFTTKKIIKNPIGNKNILFRRTTNRYGKKGTISHNVGYFYVIRDAETGRFVSRQN*
Ga0102954_10586524	F053651	N/A	MKYNKKEKTLKEIDRRKLQKFEIETKCRIMKTLLGGNLKYRLQLNKNYEKKLLTYK*
Ga0102954_10586525	F087059	N/A	MKMKIQVIIKNVYGNQLIYPKCDISKAFSNIAKTKTLSIENLKTISQMGYKVNVVNETNIKDLIQ*