Scaffold Ga0102954_1021874

Overview

Basic Information

• Taxon OID: 3300007778
• Scaffold ID: Ga0102954_1021874
• Source Dataset Name: Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1785
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4965
  • Long. (^o): -122.1329
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010878	Metagenome / Metatranscriptome	298	Y
F020816	Metagenome / Metatranscriptome	222	N
F032867	Metagenome / Metatranscriptome	179	Y
F035272	Metagenome / Metatranscriptome	172	N
F066266	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102954_10218742	F066266	AGGAG	MSILNEHELEKKIVYTIKEKIQEAVAYRTYDRRTNKSCHQDYRTTIRDAKDFDELKRIMSEFVDDLMHI*
Ga0102954_10218743	F032867	AGGAG	MDELEKMIDNLVDNHYRRQHLIGTEADESEYLADIEEETYG*
Ga0102954_10218745	F020816	AGGAGG	MMKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDDI*
Ga0102954_10218746	F035272	GGAGG	MTYKQWCNLRELLTTLSDEVDSKVCDDKVSEAFDDVWDMIDEIDTTQEIT*
Ga0102954_10218747	F010878	AGGAG	MKITAWNIGIVWEDGTEENIGDVPDWVANRVDEFLNELEEEYNE*