NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102954_1006637

Scaffold Ga0102954_1006637


Overview

Basic Information
Taxon OID3300007778 Open in IMG/M
Scaffold IDGa0102954_1006637 Open in IMG/M
Source Dataset NameWater microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3311
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4965Long. (o)-122.1329Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008882Metagenome / Metatranscriptome326N
F013295Metagenome272N
F024204Metagenome207N
F032075Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0102954_100663712F004343N/AMTQHKEMIEEARRLLNSERENIPSMSKNFNKDYWLLTYPCGKIVKTYEDKRKKDVVIQESY*
Ga0102954_10066372F032075AGGAGMSKLHHTKYKENYKNYILDCINSSDDLINQELTRDQKIQYLFNRFNSEYGWNIQRVGKYKAMEEWLSGLAINIPYTYFDIIELAQEMGSIDSNPSQALKDRVCENYFSFMAQMVLLLEDELEEVA*
Ga0102954_10066376F008882GAGGMSVTRYNFNKPKINRQELELLNWFLAHTDDNPLINPKALELFKANGYSAKNYQDLVNKIKTILKTYKTKGEL*
Ga0102954_10066377F024204AGGGGGMKNYSYQEILEDGIEVCASCGGANINANRNIDDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKETLNKINRGEL*
Ga0102954_10066378F013295AGGGGGMKINNLTPKQFARREIIKYLRDLFDNPQKYIKDFDSYTHRQQEEILRFVSLDEHRIDKLLNLPMGES*
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