Scaffold Ga0105672_1029134

Overview

Basic Information

• Taxon OID: 3300007772
• Scaffold ID: Ga0105672_1029134
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3469
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Anemone Vent, Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.933177
  • Long. (^o): -130.013868
  • Depth (m): 1541

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042024	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105672_10291347	F042024	AGG	MLTTTGIIIMTIYTVTMLYSIVNDTTRKTSQRIGKILLSIGEGILLYTGSIWFVVLSLGAVVLSAAAILLVPVIKEALSLELENIASEGGVAWTVNKAVALTAGATSLVVVGVYCLMVTQGIAA*