Scaffold Ga0105700_1100804

Overview

Basic Information

• Taxon OID: 3300007771
• Scaffold ID: Ga0105700_1100804
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_DNA CLC_assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 829
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Marker33 Vent, Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.93316
  • Long. (^o): -129.9822
  • Depth (m): 1518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005415	Metagenome	401	Y
F012783	Metagenome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105700_11008041	F012783	AGGA	MKEYDHADHMAVMSELLVSYQLKNETQDKINVANAKLDEIKELQKKKEDTDEVPF*
Ga0105700_11008042	F005415	GAG	MRDWAKTLVDREIERRPKGHKLKQLKDLKMKAIDTVMEAGTPEVLIISLNQVSKKIGMEWNTDIKALPNVQ*