NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105018_1139861

Scaffold Ga0105018_1139861


Overview

Basic Information
Taxon OID3300007760 Open in IMG/M
Scaffold IDGa0105018_1139861 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)771
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013814Metagenome / Metatranscriptome268Y
F105927Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0105018_11398611F105927AGGAMKRQNKIKEWYLRYFDWNKDGYVNWWEYLIPFGFILLVEVIAEIIGLFIGKLFF*
Ga0105018_11398612F013814N/AMELIDFQEKKWQVIGKVEGHLIDDPSTLKKNYGCDMVIRNPQNIYFMLNKIIDVEYEDI*

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