Basic Information | |
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Taxon OID | 3300007758 Open in IMG/M |
Scaffold ID | Ga0105668_1063877 Open in IMG/M |
Source Dataset Name | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Marine Biological Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 945 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Axial Seamount, northeast Pacific Ocean | |||||||
Coordinates | Lat. (o) | 45.9372 | Long. (o) | -130.082 | Alt. (m) | Depth (m) | 1500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012032 | Metagenome / Metatranscriptome | 284 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0105668_10638771 | F012032 | AGGA | MTKQELKTTVGIGFFSCKWIKNNGQVAKVKRGILGQYAWRFTHDPIANKDNFQEHNDYVLAFRVGSGLLPEHQRWASINPNTVFDINRVAV* |
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