Scaffold Ga0105668_1043980

Overview

Basic Information

• Taxon OID: 3300007758
• Scaffold ID: Ga0105668_1043980
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1706
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9372
  • Long. (^o): -130.082
  • Depth (m): 1500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105668_10439801	F067830	GGAGG	MENGTLTIVDEVNGKVLAYRNKPSIELYPTTKEIGFSEFSYSWEEII
Ga0105668_10439802	F010920	AGGAG	MSKIKKYDVLISYPIKVGAESKKHVKEILMANELLRNAADLTLKITEVKDGKWYINNS*
Ga0105668_10439803	F016410	N/A	MRKFSSKKEQLEWADKLLRKLSERNTGGVTPIIKKMIIEEYIRRLKK*