Scaffold Ga0105664_1041826

Overview

Basic Information

• Taxon OID: 3300007756
• Scaffold ID: Ga0105664_1041826
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1314
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9372
  • Long. (^o): -130.082
  • Depth (m): 1500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F009404	Metagenome / Metatranscriptome	318	Y
F041254	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105664_10418261	F005148	N/A	GGFFLKQKKYEEHLKRTLPESEEVECKKCGKKFYDEFNLICLGALDMCLLCANRNLDKRTIERAYNVKQ*
Ga0105664_10418262	F009404	GAGG	MSSNNEPEEIQPKGESLVKYCAICGVELEDTVLTNRYWKCLSCESIFQVKVRAGE*
Ga0105664_10418264	F041254	GGAGG	LEKQRLTKDEYLDQLDPDKLNLEKKDLLDFCHKCTEEWKKSKLSNFKYIVAIELIAAGVKCTPEEVLKAVWKK