Basic Information | |
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Taxon OID | 3300007756 Open in IMG/M |
Scaffold ID | Ga0105664_1035521 Open in IMG/M |
Source Dataset Name | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Marine Biological Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1371 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Northeast Pacific Ocean | |||||||
Coordinates | Lat. (o) | 45.9372 | Long. (o) | -130.082 | Alt. (m) | Depth (m) | 1500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005399 | Metagenome / Metatranscriptome | 402 | Y |
F006146 | Metagenome / Metatranscriptome | 380 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0105664_10355212 | F005399 | AGG | MKAAIELDVFQEMKLEENTGEIVMRPMAEMMDAPLDFIDEEDEPEWTPLFQVLTETIIDPFTVPASTEVPNEKDYHMMVAVSEDLFRVANDFARKVEGLHTIDPKEYEERMKRFEQGTFWPTQEQKMHMEEHGSGPDEER* |
Ga0105664_10355214 | F006146 | N/A | MIITTATVIIVQALVVSWIVFTNPEPCPRKYRVTQENGGVLVNSSDVHRYCELDYGGKFVLKDEYKE* |
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