Scaffold Ga0105664_1022281

Overview

Basic Information

• Taxon OID: 3300007756
• Scaffold ID: Ga0105664_1022281
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1105
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9372
  • Long. (^o): -130.082
  • Depth (m): 1500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F068933	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105664_10222812	F040140	AGGAG	MLSCKLSMPKFGKKFEDTGFDGSKHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKAQHPKDLDFALKHFVWSKKQLEPGLKCELC*
Ga0105664_10222814	F068933	AGG	MSKLGELKRFHRELLMPKALPGMKGTIGRPSDLIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD*