NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105664_1005947

Scaffold Ga0105664_1005947


Overview

Basic Information
Taxon OID3300007756 Open in IMG/M
Scaffold IDGa0105664_1005947 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1473
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameNortheast Pacific Ocean
CoordinatesLat. (o)45.9372Long. (o)-130.082Alt. (m)Depth (m)1500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000107Metagenome / Metatranscriptome2222Y
F006126Metagenome / Metatranscriptome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0105664_10059472F006126GAGGMSDLSFKKFTRQLNERRYIGPQGTVEYKKLSPKMSAAINDVYSMINKVSDPIVSKIEGIIRAVSKKHGVSTYDIDDYFDNELIK*
Ga0105664_10059474F000107N/AMSIKNTSVVDTVSKYIVKSTGIGSEDDQELVDAKELTEGTNESKVSLIECYYLIENVGSTAGTLTISAGDETLPLDGKGKYGLRPGQLKFGNDKQFTLTTDSNVKSYLLVTEFRRN*

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