Scaffold Ga0105014_1007595

Overview

Basic Information

• Taxon OID: 3300007755
• Scaffold ID: Ga0105014_1007595
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6220
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F038425	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105014_100759514	F038425	GAG	MDGERSEVRCPNCDERLWWWAYASSYTGDGSAELGLGCENEKCEGHEVLPEDVYDAIVTEEERIDG*
Ga0105014_10075959	F021867	AGGA	VREDSNMKKNENVDWDKVNRGKVRYGFALELYKKGGILKPSELGRIEAFVGYVMDGVENDSTVIEAPVSRLMPSEECKQVIRTETEGSKAFVKAMVHIDSEGLKEKDLDRVLSALDNGKITMDNLQDSLDRIASIKKSYK*