NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105547_1113988

Scaffold Ga0105547_1113988


Overview

Basic Information
Taxon OID3300007750 Open in IMG/M
Scaffold IDGa0105547_1113988 Open in IMG/M
Source Dataset NameMarine sponge Stylissa sp. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', st44is 200bp-25jan2016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)590
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Sponge (Stylissa Sp.) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina (low pH), Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060040Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0105547_11139881F060040N/ARELPENVAELRNIERAMKKLVEDVKKLQKKVEEQTAATGSSGQVHPDAPFKKSENYAKVFLQGLMKMAADKGYDGIGLSTGKMKKAHGGIPKGGDKFYDEIGVKAMKRIAKKSGFKFTDTTIVDGQGFTWEKIPLIEMRDINTGQRIPGNPTIPVYSKGGFVKKNVVRG*

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