Scaffold Ga0105547_1023285

Overview

Basic Information

• Taxon OID: 3300007750
• Scaffold ID: Ga0105547_1023285
• Source Dataset Name: Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', st44is 200bp-25jan2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1361
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Sponge (Stylissa Sp.) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina (low pH), Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017657	Metagenome	239	Y
F082820	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105547_10232851	F017657	N/A	EALNKATKAKQKMAVEAEMMKQLQPTVPEVTAANIDMQPAIIPNPKPEGPVINPNVFNPGNLYPGISGNTKLAATWNPMMDPAAG*
Ga0105547_10232852	F082820	N/A	MRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKNYAIGEAQKLLTDQLKKSMPSLPDATGDVVPAKPSLPKF*