Scaffold Ga0104988_11027

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_11027
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 213274
• Total Scaffold Genes: 301
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 145 (48.17%)
• Novel Protein Genes: 25
• Novel Protein Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Associated Families: 25

Taxonomy: All Organisms → Viruses (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F001246	Metagenome / Metatranscriptome	737	Y
F001968	Metagenome / Metatranscriptome	610	Y
F002226	Metagenome / Metatranscriptome	580	Y
F002243	Metagenome / Metatranscriptome	578	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004208	Metagenome / Metatranscriptome	448	Y
F004314	Metagenome / Metatranscriptome	444	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F005727	Metagenome / Metatranscriptome	392	Y
F007569	Metagenome / Metatranscriptome	348	Y
F009072	Metagenome / Metatranscriptome	323	Y
F009839	Metagenome / Metatranscriptome	312	N
F010017	Metagenome / Metatranscriptome	309	Y
F013172	Metagenome / Metatranscriptome	273	Y
F015864	Metagenome / Metatranscriptome	251	Y
F024768	Metagenome / Metatranscriptome	204	Y
F027061	Metagenome / Metatranscriptome	196	N
F032484	Metagenome / Metatranscriptome	180	Y
F032934	Metagenome / Metatranscriptome	178	Y
F035276	Metagenome / Metatranscriptome	172	Y
F054801	Metagenome	139	N
F074866	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_11027115	F032484	N/A	MKKTDDMDKLLVIDHSNKIISQKRELNPPSFNARFRDKVRKKYPDYELK*
Ga0104988_11027165	F005727	GGA	MMRSLTCSRSADFHRATMLRVAAVAVLLCLLWEPIRPIRNVTAQALYTAGDLIAR*
Ga0104988_11027171	F015864	N/A	MTDLRYSTGTELFEFLYAKCREDHDLLAMIVDEYIVSLSDSKLIELEDFLTNNFGDDE*
Ga0104988_11027174	F001968	N/A	MFDELWQEIQDAPGEIFDIPELNDEEFNMNEYLAADYDY*
Ga0104988_11027176	F004314	GAG	MYDDYDLDYTYATDYSYDLDEYYAQDAQDLDEDYARDGQDYEALAYRHYA*
Ga0104988_11027183	F002243	GAG	MPDFPTLQSKDGTMLVGFYPVATPYGDISEEWCMQILSWKGIDQISKKFLNRVEKAVAIRERLAYDYIITGDNQDLPQTGNPFYGAC*
Ga0104988_11027185	F000744	N/A	MMTEAILQLNVHEIGVILSALQTLTLREEHQIAREYGSVSALYNKLYTVFEQMDSSETGLRNDVVPSF*
Ga0104988_11027186	F013172	AGGAGG	MSYYWTTKMNTATNRRLDKLENSGVKIDTETHEGRKAIGYNYLELALDESNDD*
Ga0104988_11027187	F032934	N/A	MDKPILIRQFAKRWYLYWADTGRSIASFASEFEAYAARRSVIEYNKKGGIS*
Ga0104988_11027194	F004898	N/A	MDLSELIDELREISMYETDPQDWMGYLENDDYWVPDSELAY*
Ga0104988_11027202	F000345	GGA	MTEPNELGKALKEWWDSDSFKELQKANEEARERAVGKYFMLSEQDKIDMVEAITYIMCKAESEGCSHRGLQSELGIYPAGFWVDHLMEVHNALWTYYHDKKKEQELKDDLDALDDFIK*
Ga0104988_1102721	F009839	AGGA	MTFGCFHTVFQNKRATEFVLQEFRKYYPNNPYTIICDGGVDYSDLAEKYNCNYVHSYMRIGRRNWGDPSGVYGFTKDESLHWLHHFREAAKHVANNDGTHMIMMEDDVLTQGEVKIDPIWECAGFDVPGNKISPALLDHIKTKYGAQPNVDWYGAGGGSIFNIETFLNNYHKIYDFIDDDFDLILNTMDHRFGWLDLYMQIAYFVCGKEYTINTNLTETWKTPDFRNSEFTLVHAYKELY
Ga0104988_11027211	F004546	N/A	MDYTEEFPFDQFPWKLVYKDGNETRKCYFDSEHNRQKHIDRYKLKKKEIKLSYKFEQ*
Ga0104988_11027212	F007569	GGAGG	MNFTPEQYKLIYNAVRRYQYDKTVLDSKEYNTCSEVLDELFDTVYTQRVEQPT*
Ga0104988_11027217	F027061	N/A	MELSMRPKSGDRQKLIARVIREVADRLCTDWGELEDPIEILREIADEVEEL*
Ga0104988_11027220	F074866	GGAG	MTEIKTCHNCKYYKDYEGVFDWISSRIFGYPTLQKCFHPNRVKFVDYVNGTVSPYTTCSTERSYGNCGIMRNNWEAE*
Ga0104988_11027221	F035276	GAGG	MSSYISCYNQETRELEHYKVPYDVSVYIQQLECEIKYGSGGVKRLYPFRFGEKVND*
Ga0104988_11027222	F004208	AGG	MTYNLNPEATAFSYTREELFNCITKIVAHPHKTITEHDQSRALAIMLVFEDYFSNFLESDNNGGYYVYERDETDFTDFVRFKLCIDDYDYVSADEVLK*
Ga0104988_11027224	F054801	AGG	MTYKVRYTGFGPYKDVLEQNQILTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVK*
Ga0104988_11027229	F024768	N/A	MDYETEIIDGRKAIVRHFFKAHEIQIGSRWARADGSKGFVTVEGLNSYGDTKPWIEVLYSWELNGEKFTHEKDAFAFQCRYCLIVE*
Ga0104988_11027234	F003331	GAG	MTLTEKAQIYKNVWTCAYRRRHAAKCKGDWNLYQREHQTLLMCLKIAKWTIFDTDKRKMV
Ga0104988_110275	F010017	AGG	MNHRKHKQAKNQKKKRMYTPDGYIADPPDAVCPHCGQKQKSCSYVNSVSRAWARDRCAKKNSTESSEG*
Ga0104988_1102758	F002226	AGGAGG	MSLISQKDREMVIDALEFYIQDMKKNNCNEAAIYSYNTLLKWIELEYFKNEN*
Ga0104988_110276	F009072	N/A	MKKYNSEDYFSVIETKTGRKIADCGEEIDALMMVAFDPQNRTITRNKFMMGQVIDIEMPKALPTNELAINTEPYKQHQEEWMVEKINQLPQIKLPEGEGQPVIV*
Ga0104988_1102787	F001246	GGAGG	MSALIAWCLANQALIATVLFAVSEALGANPKVKSNGILSLILLQVQGQLKAKGAKDLTP*