Scaffold Ga0104988_11022

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_11022
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 126277
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (48.63%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012760	Metagenome / Metatranscriptome	277	Y
F037189	Metagenome / Metatranscriptome	168	Y
F040538	Metagenome	161	Y
F043837	Metagenome / Metatranscriptome	155	Y
F053815	Metagenome	140	Y
F057305	Metagenome / Metatranscriptome	136	Y
F070028	Metagenome	123	Y
F091635	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_11022104	F091635	AGAAGG	MDENEDLSEEDILKASEAYLMFVHRFSEYVKEMDPKLWERAREYAADFTKIPGVKIELVDEDINDDTDGNHKNGSD*
Ga0104988_11022125	F037189	N/A	MPNSKQRITSRRHKKRKERIARNRAKSLMEAKVGTLRKLDAIGQLPKSVKQERLPNG*
Ga0104988_11022129	F053815	N/A	MQKEVRCLITNKLLGEKEWRWYSWELEAPISASGLAELEHRRFDPDDELAKILWEEWDWTREIGYPNL*
Ga0104988_11022176	F070028	GGAGG	MINPPTPEESKVLALQAYDRVVIVADLIMEHWLEGNANPPKELIDAYYDAVDEATFFINGNRLHESVVRPNSDFYEELHAKFGLENFKKKVDNTPDLF*
Ga0104988_1102229	F040538	AGGA	MEITTVDRPTKIQRVFDYMRSGNTLTAGEARKRFRVGNMRATMHDLREAFDRFDMNYAVVREPRNGRSYYRIVRNRSR*
Ga0104988_1102231	F012760	AGGAG	MKIPELVYEIRNLARKEEDPVKKDLFFQCAKSLEVLGNLAKVSDLAVAEYKNCKDLNPIELDGNFKHYIDQVTLDMLDEHVDALIHYGFMSKHDRWPYGNEEIVKFTPKYLKSQIVKDSSIE*
Ga0104988_1102233	F057305	N/A	MGRQKNKNRKPTESAYYYFVAHIDSKGNATPLLLTEADFKRAKKRAAKNKEDVPMDFIAITQLHKE*
Ga0104988_1102299	F043837	AGGAG	MVKKLKSRYGDERIITLLEDGRYRIEGRSLYTRHGTGLFDFEGGPCYIIGDRLLDVEDTPVITNIEIDESNLADNYASVILSVKKAKNVKVSKKSNKQNR*