Scaffold Ga0104988_11007

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_11007
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 72751
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (37.25%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F001018	Metagenome / Metatranscriptome	804	Y
F001806	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002876	Metagenome / Metatranscriptome	524	Y
F004130	Metagenome / Metatranscriptome	451	Y
F025982	Metagenome / Metatranscriptome	199	Y
F027508	Metagenome / Metatranscriptome	194	Y
F040073	Metagenome	162	Y
F067679	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1100710	F040073	GAG	MLQFILSPEDMFWQEKMTRQINDCSSIAELREMAVLLTKIATTRQVVIKGLVKDALDLMQEAYHPKGMNDVPNDEL*
Ga0104988_11007102	F001806	N/A	MGAIVKEQSICARMDDETRLKRVEALETIKNKALEKAQRGEDSLEVRDFVTSAKKELAYELPDEDAFRKAMKATLAYKAKKG*
Ga0104988_1100711	F002333	N/A	MTTTATHDEFNSSSQATHTELNAAQATIYTRTNISRAFPDFDDSGVVGIYLRGDSCLVVYRDGTERLYPREAIKATFTSYTHRLKDFFSYLGPNYRGPSIWHDNSYILFKGWNYSHTLGHLNDNAKLQGQWADKFIRLTDPTKLKALLQSEHTDLGHLVAPDGLRLPDRLPDLDSELETVQEERPMFGEPHCSCGSFQRQLNNLPLFQQEIEGFKQHCIHLTWIAKYRSLLSKRTEARDACPAGVPHTCVAWWYQPPMDHASDGRFLLLHTKSGVQAPLSHWRTYKPKESFTQRHAWDLFFSMLDAGYVPFPGTSLPQLRTAFKHD*
Ga0104988_1100714	F001018	N/A	MAQITSTKLKELSVIKLYEHYAALEKSLPLLTPESQDLAKAELESCIDLRSEKVDRIYYAMAAHEDALERIKKEGDLVATAKLHHTSQLKSLKGLLSYLRRVLPLDTNKITGRNYQFTLIKKKELTVEINSDPELWDTEEKSTYCMEEETTTTKRVVLRSFSGEVLSDRTEPKTTTKVLPNLDVIRYAYQNGQQLPTGVKVVQDYSVRSKRIFNEPKVDLVASEYPRELLPEDTSAD*
Ga0104988_1100715	F025982	N/A	MSCHDHALKDFDLQLEMNDLQTGMLKDGDEIIPYHGDEHDDLEAKRLKLLFGKRFHQNASNAYWYWLQKEKPCSNKVN*
Ga0104988_1100745	F002876	N/A	MACKKSELVSAINSFGSARATGDHNLIGFAVNLIGQLVETLEFAPEVDPVEANETNVTD*
Ga0104988_1100756	F000973	N/A	MYTGIPKGLQDIVAELKGIKHILASMWHSRYQEGETDQLNPEAYTDEYISTEECGRRLGISDQTVRNWISIGKNNPSKGWVEGLHYVNASPNPGKKALLRIPWNTLVRSFAKNKKVDQADLRDNLPSMYCTTTAEKVMENGAPL*
Ga0104988_1100762	F004130	N/A	MHNNAAGFLDGFMDEVMCRCIDEDDFGQPLANQNNDVPLQDMYNRGLVAPMQGLERNPLHIEGMKRPGVSGLIPSMEEGVAMGASPKPHALVLELPEADDEMKIQSAKRRGLMR*
Ga0104988_1100792	F027508	AGGA	MTASSGQDSASDFDINRFEQLLERLEASKGRQQRQKSVEGRRDIFSQGLAGMMSNF*
Ga0104988_1100797	F067679	N/A	MAVPGRPEQAQTFLRRAADAYNSAMHSVGDLMPTKIKKGFQSGVELMTPESRREITDEQGNRILSSISNYSTFSPNFKKELKNVKGISFNETPQEFIGAYAARLLTDAGTDSTRHLYWRYNHPMAIADKLIEKAAGPAYKQFNPTQKGLVGLAISAPTVASLGQIDITNPLEQFRSKGFAQTYAEEGAEDRRETGQPGTELLERLFLGRQGRPLKYETAKEDIPSLTPERYSNYMKNYYQDKGIIGLGLIKGTMENLEGVPEARIVGFPIGLQAAGALAGGAMALRGALQTRPPVVTTKERRVISYPGGSSRVVEQDVNTRVPMATRKTASIALAGSLAGALVGNLTNQAIASLNNHPENLPSTNEYR*