Scaffold Ga0104988_11006

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_11006
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 71529
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (20.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016799	Metagenome / Metatranscriptome	244	Y
F022186	Metagenome	215	Y
F028808	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1100610	F028808	N/A	MKRYSLLYESSIYDYLVWEPTGKLQYIADELDKIPTDNTKLYRGMSEKEYNILKSTGKVTSKGRGNTRNISGSYLASDFKLAARFALVNYRDKGEGIIVVVDKSKLPDLKNVDPGNYVTSYIPIEAVTKIIDLKQL*
Ga0104988_1100647	F022186	N/A	MIRLTQIIEDLTKPQVKEAVDPSLLKLIDEVINDTNVLVVNNLKMVKDILSKEPIDKAKLDVALSNYKRYFNRDNGGTPEVIRGMTMQNKLDELSK*
Ga0104988_1100666	F016799	N/A	MRVMPLVRQYHPSIINTDLDVYKIKDRVMAAPINNHPEPFQVTDKLGVNQINNTKIRTVVYNSKGLFYII*