Scaffold Ga0104988_10997

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10997
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 65911
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (82.65%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008879	Metagenome / Metatranscriptome	326	Y
F009260	Metagenome / Metatranscriptome	320	Y
F014358	Metagenome	263	Y
F021992	Metagenome / Metatranscriptome	216	Y
F057982	Metagenome	135	N
F069826	Metagenome / Metatranscriptome	123	Y
F071969	Metagenome / Metatranscriptome	121	Y
F088778	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1099733	F069826	GGA	MMEEIKKRKGRGPSKKPTLFNTSLRLSREVMDYFNTHHPYSKQAKIREILTEYVNSQQQGANNGN*
Ga0104988_1099743	F057982	GGAGG	MSTYKYRITYSNGNYVDWDSMQKELAWAYKWGIFLYAVRLNIGAWRAGHKSFTYWLYVMGRKPKITREMKND*
Ga0104988_1099763	F014358	GGAGG	MLDFDWKICVDCGDDVPASRYQAFCLFCERDREHAASEARSSWCIVQEYGKGPYQLVTPTQAPTTLKQTNQKELRT*
Ga0104988_109977	F071969	AGGAG	MKEALISTIEPRETGYRVAQVVAEGETFPVAPALFWTPCADDVVADQFWYDPSDQQIKPIPQPEPTV*
Ga0104988_1099778	F021992	AGGAG	MAMQYDVKSTHLNASGSIFSGRARIKGFSICATASTAGTLQLKDGGSGGTVMVEIDIPSNSNPNSFYVLVPGEGVLCSTSIYATMTNIASVTVFYG*
Ga0104988_109979	F088778	GAGG	MGVLGWVAAVVLVALMLPLLAFLYLDVLETKHEAKAQMEKVEKLRREIERKNRDKEPTNFDDNPVFDRVRRPLSLPLPKSKELGEP*
Ga0104988_1099790	F009260	GAGG	MATPKKAPSVVVGEADNKKYLKDMNVSVANTRSGEYKPTKTDGIKIRGTGAATKGVTARGPMA*
Ga0104988_1099794	F008879	AGG	MATFKKGDVVRLTGVVPLGPVIGMRMDDDGNVSYLIEWTDIEGHVQQRWFAENELAAV*