Scaffold Ga0104988_10982

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10982
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 58210
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (82.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002766	Metagenome / Metatranscriptome	531	Y
F003540	Metagenome	480	Y
F064663	Metagenome / Metatranscriptome	128	Y
F104781	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1098247	F064663	N/A	MNIKLMKLPPRKKLWGWDYNKNRELQMTGKEWHEYARRPELKTERGGDSAFGGGVEVWLDGKNVNRR*
Ga0104988_1098259	F002766	GGA	MLDFAESVLKEIRKLRQSSEEMVLHGAIQDMERYRFVMGRLEALKLVEESVKELLKRRTEDQF*
Ga0104988_109827	F003540	N/A	MEKVVDMLFPVLLAAVGWLLSEITSFQNRLIAIESKMPILITTDGVPTDSPISAARRQDMKDDIMADIHDLQVRVKLMEERGK*
Ga0104988_1098271	F104781	AGG	MGAAVRGGGAVGSGPRNKMVSEPSMKTGKVVMASKGGAINQHKEMAMGMMGGGMMSRGYKKGGMAKKKVKKMRYGGSSCG*