Scaffold Ga0104988_10975

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10975
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 54371
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (34.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F013631	Metagenome / Metatranscriptome	269	Y
F038671	Metagenome / Metatranscriptome	165	Y
F040617	Metagenome / Metatranscriptome	161	Y
F080050	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1097523	F040617	N/A	MKSVTIPITTLEALIECLADAINVCYNVDSKSKRCELSYPYAVGYSRSAMLLIQDQLKNLKTQN*
Ga0104988_1097531	F013631	N/A	MIVSEVFHYTTSGWDWQDCNMNQMWIEEIEESPDCYKYVAVAYNPRKDVRIVMSEPRCYADTLNWIRSWCRTFCILPEFSVAV*
Ga0104988_1097539	F038671	N/A	MTLTTQTIQEFFTENEWDMIYNFIGNALDNDDYEREDVYAIRAKIHNLFLSQ*
Ga0104988_1097542	F080050	N/A	MTDTQTQMTEQSYSFRGIFTDKNYSTRLGYMAPTAQDAWNGIAKQHPTFLVQNWGLEGQVD*
Ga0104988_1097547	F005089	N/A	MTTFTTFPFRKTMSINDLFDSIKLTESLALENYQQRNGVVDYRLDGVCNHYFPVWNDKEPSFKTGEIVLTCKVSKTVKGQLRYNFLINGKRVAEKMIPSTFLSLGAFWSK*