Scaffold Ga0104988_10968

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10968
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 50114
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (82.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004788	Metagenome / Metatranscriptome	423	Y
F030745	Metagenome / Metatranscriptome	184	Y
F063656	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1096836	F004788	GAGG	MDAFEVLVSQLDEKVAQLKDHLSEGKALNFEEYKKLCGEIRGLLLARGYIIDLQQKMEYSDE*
Ga0104988_1096854	F063656	GGAG	MTNDEATTDAGLLWRPMSSCPNGPKVLLLNAGGIAGVGWYDGKDKWWIGWHPLPKIPPEIKALIGNPTNIGRMIGD*
Ga0104988_1096859	F030745	GGAG	MTDNIKPFIKATTPHNENVIAMLEEWLEAAKDGEIISVGLIGKRVGGEWQTSFSSSDNRLEDAAMLLELGIRRLGFKQT*